TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|299471650|emb|CBN76872.1| selenoprotein O homolog
[Ectocarpus siliculosus]
         (672 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    32   0.61 
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    31   1.0  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    30   1.3  
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    30   2.3  
gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    28   6.7  
gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    28   6.7  

>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = -2

Query: 104    LDTLPFDNRVIRELPVDPITDNYVRRVENACFSIVAPDPVVKPVMVAASNSALGLLGLAA 163
              +  +P  + + + L  +P   NY+  +E     ++ P  + K  ++ ASN+   L  +  
Sbjct: 715677 ISNIPNFDHISKRLIKEP--KNYLVELERLHSVLIRPFALGKSEVIPASNTKFSLFVIGK 715504

Query: 164    EEGQREDAAEYFSGNK 179
              EE  + +  +YFS NK
Sbjct: 715503 EEANKINLFKYFSINK 715456



 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 26      SSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAATAAAATASVSHSNRNDRVVTARPAS 85
               +++S     AA + S    +  I++T   T  AAA AAA T + + +       T    +
Sbjct: 1209012 ATTSTTTATAATTQSTATTSTSIAATVKAT--AAAAAAATTTTTATTTTTTTTSTTTTTA 1208839

Query: 86      RTAMSTAVDAAATCSSS 102
                 A +TA+   AT  SS
Sbjct: 1208838 TAATTTAIATTATTVSS 1208788



 Score = 27.7 bits (60), Expect = 8.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 395     LTIDYGPYGFMDFFDPKFVPNGSD 418
               +T++ GP+ F+DF  P+F+ +  D
Sbjct: 1146554 MTLESGPFQFLDFHKPRFLQHFDD 1146625


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 20/75 (26%), Positives = 41/75 (54%)
 Frame = +2

Query: 27     SSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAATAAAATASVSHSNRNDRVVTARPASR 86
              S S    A++ SSS   G+  ISS  + T   +  ++++T+S S ++      ++  +S 
Sbjct: 811334 SISSTSSASSTSSSGSGGSISISSGTSSTSSGSGGSSSSTSSASSTSSTSSTSSSSGSSS 811513

Query: 87     TAMSTAVDAAATCSS 101
              +++S A + ++T SS
Sbjct: 811514 SSVSRASNTSSTSSS 811558



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = +3

Query: 18      RASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTY--PAAATAAAAT-ASVSHSNR 74
               R S+   +SSSS    +++ SSS    +   +S++  T   P +A+ ++ T AS  H+  
Sbjct: 1012083 RLSLSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSVHTMIPPDSASLSSPTPASTLHAKT 1012262

Query: 75      NDRVVTARPASRTAMSTAVDAAATCSS 101
               N  V T+    R  ++++VD +   +S
Sbjct: 1012263 NAGVFTSFGFGRNFLTSSVDNSTNSAS 1012343



 Score = 28.5 bits (62), Expect = 5.1
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +3

Query: 551    PPQQLQGLWAMAQENPEALAQRFSAPKDAVIAELREEMQKLSNYDAAQQRLKDMEALEED 610
              P +  QGL  +  ENP+   +  + P+  +  ++R E +KL      Q  +KDM    E 
Sbjct: 250200 PHKPYQGLADLINENPDLFDKVNTPPEPYISKKMRRETEKLQR---IQNYMKDMRKKIES 250370

Query: 611    GXEAIEDAEKGDF 623
                   E+ +   F
Sbjct: 250371 YNPMEENVDNKTF 250409



 Score = 28.5 bits (62), Expect = 5.1
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = +3

Query: 9       SSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAATAAAATAS 68
               SS  GLLL       GASSSS+V G A PS+         SS+++ +  +++++++++ S
Sbjct: 1075815 SSNHGLLL-------GASSSSKVLG-ATPSAQISSSLSSSSSSSSSSLASSSSSSSSSPS 1075970

Query: 69      VS 70
               ++
Sbjct: 1075971 LT 1075976


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +3

Query: 38     SSSCRRGTHHISSTAAFTYPAAATAAAATASVSHSNRNDRVV-----TARPASRTAMSTA 92
              ++S   G+  +S+T + T     TAA  TA+ S +N  +        T+ PA     + A
Sbjct: 137598 TASAISGSTVLSTTTSATTSTTTTAAPTTATSSTANTTEPAFDSPSSTSSPAVPATTAAA 137777

Query: 93     VDAAATCSSST 103
                AAAT +++T
Sbjct: 137778 TTAAATTAAAT 137810



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 38     SSSCRRGTHHISSTAAFTYPAAATAAAATASVSHSN-RNDRVVTARPASRTAMSTAVDAA 96
              ++S    T  I+ TA       ATA  ATA+++ +      + TA  A+ T  +  +  A
Sbjct: 269151 TTSTTTTTVTIAITATAATATTATATTATATIATATIATATIATATIATATIATATIATA 269330

Query: 97     ATCSSSTLDTLPFDNR 112
               T +++T  T+ F +R
Sbjct: 269331 TTATATTAATIIFASR 269378



 Score = 28.5 bits (62), Expect = 5.1
 Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
 Frame = +3

Query: 2      SLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAAT 61
              S   + T+SA       A+     SS++     A  S S        ++TAA T  AA T
Sbjct: 137619 STVLSTTTSATTSTTTTAAPTTATSSTANTTEPAFDSPSSTSSPAVPATTAAATTAAATT 137798

Query: 62     AAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDTLPFDNRVIRELPVDP 121
              AAA   + + S       T    S +   +A     T + ST    PF    IR  P  P
Sbjct: 137799 AAATATATAAS-------TTTAPSLSPPCSATTNPGTNTHSTYFISPF----IR*FPNAP 137945

Query: 122    I-TDNYVRRVENACFSI-VAPDPVVKP 146
              +   N   ++++   +   +P PV  P
Sbjct: 137946 LYATNATTKIQSVSLTTGNSPSPVFPP 138026


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 29/110 (26%), Positives = 50/110 (45%)
 Frame = +1

Query: 1      MSLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAA 60
              +S++  VTS  +   L+R  +  GA   +RV G    SSS        SS+++    ++A
Sbjct: 870925 LSVSDTVTSQQQASGLSRTGMELGARPKTRVGGPKPRSSS--------SSSSSSRSRSSA 871080

Query: 61     TAAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDTLPFD 110
                 + + S S  +   RV ++R   R++ S    + +   SS    L FD
Sbjct: 871081 RRRSRSRSRSRRSSKSRVRSSRSRVRSSRSRG-RSRSRDKSSEARALTFD 871227


>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 23/116 (19%), Positives = 65/116 (56%)
 Frame = -1

Query: 32     FGAAAPSSSCRRGTHHISSTAAFTYPAAATAAAATASVSHSNRNDRVVTARPASRTAMST 91
              FGA++ SSS    +   SS+++ +  ++++++++++S S S+ +    ++  +S ++ S+
Sbjct: 480711 FGASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SSSSSSSSSSSS 480541

Query: 92     AVDAAATCSSSTLDTLPFDNRVIRELPVDPITDNYVRRVENACFSIVAPDPVVKPV 147
              +  +++  S S+ + L     ++  + +D +   ++ ++      +V P PV KP+
Sbjct: 480540 SSSSSS*SSHSSSEYLSRFTLLLLVVVLDLL--EFLEKI------LVTPIPVKKPI 480397


>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/58 (27%), Positives = 36/58 (62%)
 Frame = +2

Query: 49     SSTAAFTYPAAATAAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDT 106
              S+T + T P++++++++++S S S+ +        +S  + ST   ++++CSSST  T
Sbjct: 211295 SATPSSTTPSSSSSSSSSSSSSSSSSST-------SSSYSSSTCCSSSSSCSSSTCRT 211447


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,850,332
Number of Sequences: 8
Number of extensions: 57446
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 188
length of query: 672
length of database: 3,034,108
effective HSP length: 98
effective length of query: 574
effective length of database: 3,033,324
effective search space: 1741127976
effective search space used: 1741127976
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)